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Codon Usage results

(http://www.bioinformatics.org/sms2/codon_usage.html) pgina donde se


obtuvo el uso preferencial de codones

Results for 10931 residue sequence "E. COLI WHOLE


GENOME"
(http://www.ncbi.nlm.nih.gov/nuccore/429081516?report=fasta
)pfina donde se obtuvo la secuancia complete de e. coli

AmAcid

Codon

Number

/1000

Fraction

Ala
Ala
Ala
Ala

GCG
GCA
GCT
GCC

23.00
38.00
23.00
15.00

6.31
10.43
6.31
4.12

0.23
0.38
0.23
0.15

Cys
Cys

TGT
TGC

36.00
32.00

9.88
8.78

0.53
0.47

Asp
Asp

GAT
GAC

31.00
22.00

8.51
6.04

0.58
0.42

Glu
Glu

GAG
GAA

50.00
62.00

13.72
17.02

0.45
0.55

Phe
Phe

TTT
TTC

98.00
58.00

26.90
15.92

0.63
0.37

Gly
Gly
Gly
Gly

GGG
GGA
GGT
GGC

25.00
42.00
16.00
18.00

6.86
11.53
4.39
4.94

0.25
0.42
0.16
0.18

His
His

CAT
CAC

94.00
34.00

25.80
9.33

0.73
0.27

Ile
Ile
Ile

ATA
ATT
ATC

243.00
105.00
78.00

66.70
28.82
21.41

0.57
0.25
0.18

Lys
Lys

AAG
AAA

71.00
178.00

19.49
48.86

0.29
0.71

Leu
Leu

TTG
TTA

101.00
144.00

27.72
39.53

0.22
0.31

Leu
Leu
Leu
Leu

CTG
CTA
CTT
CTC

71.00
59.00
49.00
34.00

19.49
16.20
13.45
9.33

0.16
0.13
0.11
0.07

Met

ATG

152.00

41.72

1.00

Asn
Asn

AAT
AAC

83.00
62.00

22.78
17.02

0.57
0.43

Pro
Pro
Pro
Pro

CCG
CCA
CCT
CCC

26.00
31.00
18.00
16.00

7.14
8.51
4.94
4.39

0.29
0.34
0.20
0.18

Gln
Gln

CAG
CAA

81.00
97.00

22.23
26.63

0.46
0.54

Arg
Arg
Arg
Arg
Arg
Arg

AGG
AGA
CGG
CGA
CGT
CGC

37.00
49.00
16.00
25.00
15.00
17.00

10.16
13.45
4.39
6.86
4.12
4.67

0.23
0.31
0.10
0.16
0.09
0.11

Ser
Ser
Ser
Ser
Ser
Ser

AGT
AGC
TCG
TCA
TCT
TCC

48.00
35.00
29.00
42.00
20.00
19.00

13.18
9.61
7.96
11.53
5.49
5.22

0.25
0.18
0.15
0.22
0.10
0.10

Thr
Thr
Thr
Thr

ACG
ACA
ACT
ACC

34.00
77.00
47.00
22.00

9.33
21.14
12.90
6.04

0.19
0.43
0.26
0.12

Val
Val
Val
Val

GTG
GTA
GTT
GTC

68.00
63.00
45.00
16.00

18.67
17.29
12.35
4.39

0.35
0.33
0.23
0.08

Trp

TGG

45.00

12.35

1.00

Tyr

TAT

127.00

34.86

0.70

Tyr

TAC

54.00

14.82

0.30

End
End
End

TGA
TAG
TAA

56.00
70.00
151.00

15.37
19.21
41.45

0.20
0.25
0.55

Results for 1911 residue sequence "Carboxydothermus


hydrogenoformans Z-2901 chromosome, complete genome donde se
obtuvo la secuancia de la carbn-monoxide deshidrogenase
!!REVISAR SI EFECTIVAMENTE ES LA SECUANCIA!!!

AmAcid
..

Codon

Number

/1000

Fraction

Ala
Ala
Ala
Ala

GCG
GCA
GCT
GCC

7.00
14.00
19.00
40.00

10.99
21.98
29.83
62.79

0.09
0.17
0.24
0.50

Cys
Cys

TGT
TGC

14.00
5.00

21.98
7.85

0.74
0.26

Asp
Asp

GAT
GAC

22.00
11.00

34.54
17.27

0.67
0.33

Glu
Glu

GAG
GAA

7.00
24.00

10.99
37.68

0.23
0.77

Phe
Phe

TTT
TTC

9.00
2.00

14.13
3.14

0.82
0.18

Gly
Gly
Gly
Gly

GGG
GGA
GGT
GGC

7.00
9.00
26.00
16.00

10.99
14.13
40.82
25.12

0.12
0.16
0.45
0.28

His
His

CAT
CAC

9.00
10.00

14.13
15.70

0.47
0.53

Ile
Ile
Ile

ATA
ATT
ATC

5.00
19.00
19.00

7.85
29.83
29.83

0.12
0.44
0.44

Lys
Lys

AAG
AAA

11.00
24.00

17.27
37.68

0.31
0.69

Leu
Leu
Leu
Leu
Leu
Leu

TTG
TTA
CTG
CTA
CTT
CTC

6.00
16.00
18.00
4.00
9.00
7.00

9.42
25.12
28.26
6.28
14.13
10.99

0.10
0.27
0.30
0.07
0.15
0.12

Met

ATG

18.00

28.26

1.00

Asn
Asn

AAT
AAC

16.00
11.00

25.12
17.27

0.59
0.41

Pro
Pro
Pro
Pro

CCG
CCA
CCT
CCC

10.00
4.00
4.00
12.00

15.70
6.28
6.28
18.84

0.33
0.13
0.13
0.40

Gln
Gln

CAG
CAA

5.00
12.00

7.85
18.84

0.29
0.71

Arg
Arg
Arg
Arg
Arg
Arg

AGG
AGA
CGG
CGA
CGT
CGC

0.00
0.00
9.00
1.00
4.00
11.00

0.00
0.00
14.13
1.57
6.28
17.27

0.00
0.00
0.36
0.04
0.16
0.44

Ser
Ser
Ser
Ser
Ser
Ser

AGT
AGC
TCG
TCA
TCT
TCC

2.00
7.00
3.00
1.00
3.00
9.00

3.14
10.99
4.71
1.57
4.71
14.13

0.08
0.28
0.12
0.04
0.12
0.36

Thr
Thr
Thr
Thr

ACG
ACA
ACT
ACC

5.00
4.00
11.00
21.00

7.85
6.28
17.27
32.97

0.12
0.10
0.27
0.51

Val
Val
Val
Val

GTG
GTA
GTT
GTC

8.00
20.00
17.00
10.00

12.56
31.40
26.69
15.70

0.15
0.36
0.31
0.18

Trp

TGG

4.00

6.28

1.00

Tyr
Tyr

TAT
TAC

4.00
1.00

6.28
1.57

0.80
0.20

End
End
End

TGA
TAG
TAA

0.00
1.00
0.00

0.00
1.57
0.00

0.00
1.00
0.00

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