Professional Documents
Culture Documents
org
---------1---------2---------3---------4---------
5---------6---------7---------8---------9---------0---------1---------
2---------3---------4---------5---------6---------7---------8---------
9---------0---------1---------2---------3---------4---------5---------
6---------7---------8---------9---------0---------1---------2---------
3---------4---------5---------6---------7---------8---------9---------
0---------1---------2---------3---------4---------5---------6---------
7---------8---------9---------0---------1---------2---------3---------
4---------5---------6---------7---------8---------9---------0---------
1---------2---------3---------4---------5---------6---------7---------
8---------9---------0---------1---------2---------3---------4---------
5---------6---------7---------8---------9---------0---------1---------
2---------3---------4---------5---------6---------7---------8---------
9---------0-----
EF582837.1:120-884
ATGGAATCCCAGATGACATGCAACGTTAGCGAGATGTGGAGCTCCAGGATGCCTGAGGGACTGGAACTTGAGATTTCC
CATCATCCACTGACAATGAAGCACGTGGCCAACCTCATCATCGCCACACAGAGGTTTAAGGGCATTATCTCAGAATCA
GTGCTGGGCACTGAATTCAGAGATGAACATCTGCTCAGCATCATGCTGGAGAGCATCGTGGAAGAGAGAAATGTGTTC
GGTTGTGAGGCAACTCCACCGACTGATGAGGATATGATCACCAGGACGCGCGAGTACGACTGCACTGTGGAGGACGAG
GAGAAGAGGAGCTTAGTTCGGGTCAATAACAGCCTGGTGCTCCACGCAGTGATGCTGCAGGGAGGAACTGATCTCAAG
CAAGTTAAACTGAACATGTCAATGTACTTGCACCCTGCACCCAGCGTTGAGGGCAGAACTGTGGCTCTGGGCATCAAG
GGCA-----CACAGTAT-
TACCTGACTTGCCGTAAGGACGGTACCCAGCCAACCTTACATCTGGAGACGATTACCAAAGACAGCCTGGCATC----
-----------
AATCGACCCGAACAGCGACATGGTGCGGTTTCTCTTCTACAAGCAGATCTCTGGGGTGAATGTCAGCACCCTCATGTC
TGTCGCTCACCCCAACTGGTACATCAGCACAGCAGAGGCTGACAACATGCCAGTGGAGATGTGCCAGGAGTCCACCAG
CCGCTACAGAGCCTTCACCTTCAGTGCAATCAAGGAGGAGACACCCACAGCTTGA-----
AJ557885.1:89-841
ATGGGATTCGAGATGAAATGCAACATGAGCCAGATGTGGAGCTCCGATGTGCAGTCGGGGCTGGACTTTGAGATTACC
CATCATCCCCTGACAACGAGGAAAGTGGTCCACCTCATCATCGCCATGGAGAGGATGAAGGGC------
TCAGAATCAACGCTGAGCACTGAATTCAGAGATGAAAACCTCCTCAACTTCATCATGGATAGCATAGTGGAAGAGCAA
ATTGTGTTCGAGTGTGCCTCTGCTCCACCAGCTCA---------
GATCACACGGACGGACGTAGAACCGCAAAACATAACCGACGGCGAGAAGAGGAGCTTAGTTATGGTCCAAAACAACAT
GGAGCTCCATGCAGTGACGCTGCAGGGAGGCGCTGATTCCAGAAAAGTTTTCCTGAAGATGTCGACCTTTTTGCACCC
TGCGTCCACCATTGGGGGCAGAACTGTGGCTCTGGGCATCAGGGGC------
CAAAATCTGTACCTGTCATGCCGCAAGGATGGTGACAGTCCAACCTTGCATCTGGAGACATTGGAGGACAATAGTCTG
TTGAA---------------
CATCAGCTCAGACAGCGACATGGTGCGATTTCTCTTCTACAAACAGGACACCGGGGTGAACATCAGCACCCTCATGTC
TGTCGCTCAACCCAACTGGTACATCAGCACAGCAGAGCAAAACAACAAGCCGGTGGAAATGTGCCTGGAGACCGCCAA
ACGCTTCCGCTCCTTCAACATTGGTGACATCCA--AGGAAATGTTGATCGCCAGAGTTAA
(KP069026.1:26-245,
ATGGAATCCGAGATGACATGCAACGTGAGCGAGATGTGGAGCCCCAAGATGCCCGAGGGACTGGACTTTGAGATTTCC
CATCATCCACTGACAATGAAGCGCGTGGTCAACCTCATCTTCGCCATGGAGAGGTTTAAGGGCGGCCGCTCAGAAACC
GTGCAGGGCACTGGATTCAGAGATGAAGACCTGCTCAACATCATGCTGGAGAACCTGGTGGAAGAGGAAATTGTGTTC
GGGTGTGAATCAGCTCCACCAGCTCA---------
GATCACCTGGACGGGCGAGGAACAGTGCAGCATCACCGACGGCGAGAAGAGGAGCTTAGTTCAGGTCCAAAACAGCAT
GGAGCTCCACGCAGTGATGCTGCAGGGAGGCGGTGGCACCACAAAAGTTCACCTGAACATGTCGACCTACTTGCACCC
TACACCCAGAGTTCTGGGCAGAACTGTGGCTCTGGGCATCCGAGGCACAAATCCAAATCTCTACCTGTGTTGCCGCAA
GAATGGTGCCAATCCAACCTTGCATCTGGAGGCGGTGGAGAACAAAAGTCTGTTGAGTGGAGCGGGTGTGAGCATCAG
CCCGGACAGCGACATGGTGCGATTTCTCTTCTACAGACAGGACACCGGGGTGAACATCACCACCCTCATGTCTGTCGC
CCACCCTGACTGGTTCATCTGCACAGCAGAGCAGGACAACAAGCCGTTGGAAATGTGCATGGAGTCCGCCAACCTCTA
CCGGACCTTCAACAT---------CCG--AGAGGAGGCTTAA------------
(AJ566198.2:393-606,
ATGGGATTCGAGATGAAATGCAACATGAGCCAGATGTGGAGCTCCGATGTGCAGTCGGGGCTGGACTTTGAGATTACC
CATCATCCCCTGACAACGAGGAAAGTGGTCCACCTCATCATCGCCATGGAGAGGATGAAGGGC------
TCAGAATCAACGCTGAGCACTGAATTCAGAGATGAAAACCTCCTCAACTTCATCATGGATAGCATAGTGGAAGAGCAA
ATTGTGTTCGAGTGTGCCTCTGCTCCACCAGCTCA---------
GATCACACGGACGGACGTAGAACCGCAAAACATAACCGACGGCGAGAAGAGGAGCTTAGTTATGGTCCAAAACAACAT
GGAGCTCCATGCAGTGACGCTGCAGGGAGGCGCTGATTCCAGAAAAGTTTTCCTGAAGATGTCGACCTTTTTGCACCC
TGCGTCCACCATTGGGGGCAGAACTGTGGCTCTGGGCATCAGGGGC------
CAAAATCTGTACCTGTCATGCCGCAAGGATGGTGACAGTCCAACCTTGCATCTGGAGACATTGGAGGACAATAGTCTG
TTGAA---------------
CATCAGCTCAGACAGCGACATGGTGCGATTTCTCTTCTACAAACAGGACACCGGGGTGAACATCAGCACCCTCATGTC
TGTCGCTCAACCCAACTGGTACATCAGCACAGCAGAGCAAAACAACAAGCCGGTGGAAATGTGCCTGGAGACCGCCAA
ACGCTTCCGCTCCTTCAACATTGGTGACATCCA--AGGAAATGTTGATCGCCAGAGTTAA
(EF582836.1:572-791,
ATGGAATCCCAGATGACATGCAACGTTAGCGAGATGTGGAGCTCCAGGATGCCTGAGGGACTGGAACTTGAGATTTCC
CATCATCCACTGACAATGAAGCACGTGGCCAACCTCATCATCGCCACACAGAGGTTTAAGGGCATTATCTCAGAATCA
GTGCTGGGCACTGAATTCAGAGATGAACATCTGCTCAGCATCATGCTGGAGAGCATCGTGGAAGAGAGAAATGTGTTC
GGTTGTGAGGCAACTCCACCGACTGATGAGGATATGATCACCAGGACGCGCGAGTACGACTGCACTGTGGAGGACGAG
GAGAAGAGGAGCTTAGTTCGGGTCAATAACAGCCTGGTGCTCCACGCAGTGATGCTGCAGGGAGGAACTGATCTCAAG
CAAGTTAAACTGAACATGTCAATGTACTTGCACCCTGCACCCAGCGTTGAGGGCAGAACTGTGGCTCTGGGCATCAAG
GGCA-----CACAGTAT-
TACCTGACTTGCCGTAAGGACGGTACCCAGCCAACCTTACATCTGGAGACGATTACCAAAGACAGCCTGGCATC----
-----------
AATCGACCCGAACAGCGACATGGTGCGGTTTCTCTTCTACAAGCAGATCTCTGGGGTGAATGTCAGCACCCTCATGTC
TGTCGCTCACCCCAACTGGTACATCAGCACAGCAGAGGCTGACAACATGCCAGTGGAGATGTGCCAGGAGTCCACCAG
CCGCTACAGAGCCTTCACCTTCAGTGCAATCAAGGAGGAGACACCCACAGCTTGA-----
Consensus
---------
ATGGRATYCSAGATGAMATGCAACRTKAGCSAGATGTGGAGCYCCRRKRTGCMBKMGGGRCTGGAMYTTGAGATTWCC
CATCATCCMCTGACAAYGARGMRMGTGGYCMACCTCATCWTCGCCAYRSAGAGGWTKAAGGGCrkymkcTCAGAAWCM
RYGCWGRGCACTGRATTCAGAGATGAAVAYCTSCTCARCWTCATSMTGGAKARCMTVGTGGAAGAGVRAAWTGTGTTC
GRKTGTGMVKCWRCTCCACCRRCTSAtgaggatatGATCACMHGGACGSRCGWRKAMSMSYRMAVYRTVRMSGACGRS
GAGAAGAGGAGCTTAGTTMDGGTCMAWAACARCMTGGWGCTCCAYGCAGTGAYGCTGCAGGGAGGMRSTGRYHYCAVR
MAAGTTHWMCTGAASATGTCRAYSTWYTTGCACCCTRCRYCCASMRTTSDGGGCAGAACTGTGGCTCTGGGCATCMRR
GGCacaaatCMMARTMTsTACCTGWSWTGCCGYAAGRAYGGTRMCMRKCCAACCTTRCATCTGGAGRCRDTKRMSRAM
RAHAGYCTGKYRWVtggagcgggtgtgagMATCRRCYCRRACAGCGACATGGTGCGRTTTCTCTTCTACARRCAGRWC
WCYGGGGTGAAYRTCASCACCCTCATGTCTGTCGCYCAMCCYRACTGGTWCATCWGCACAGCAGAGSMDRACAACAWG
CCRKTGGARATGTGCMWGGAGWCCRCCARMCKCTWCMGVDCCTTCAMCWTyrgtgmmatCMRggAGRRRABRYYBAHm
gcywgagttaa
Primers
-------
+++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++TTGAGATTWCCCATCATCCMC start pos=68 approx Tm=59.74 approx
%gc=42.86 length=21 rev comp=GKGGATGATGGGWAATCTCAA
+++++++++++++++++++++++++++++++++++++++++++++++++++++
+++++++++++++++++AGATTWCCCATCATCCMCTGAC start pos=71 approx Tm=60.20 approx
%gc=45.45 length=22 rev comp=GTCAGKGGATGATGGGWAATCT
+++++++++++++++++++++++++++++++++++++++++++++++++++++
+++++++++++++++++++ATTWCCCATCATCCMCTGACA start pos=73 approx Tm=60.19
approx %gc=42.86 length=21 rev comp=TGTCAGKGGATGATGGGWAAT
+++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++TTWCCCATCATCCMCTGACA start pos=74 approx Tm=59.89
approx %gc=45.00 length=20 rev comp=TGTCAGKGGATGATGGGWAA
+++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+++++++++++++++++++++++++++++++RGCACTGRATTCAGAGATGAA start pos=163 approx
Tm=60.21 approx %gc=47.62 length=21 rev comp=TTCATCTCTGAATYCAGTGCY
+++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+++++++++++++++++++GACGRSGAGAAGAGGAGCTTAGT start pos=307 approx Tm=59.69
approx %gc=52.17 length=23 rev comp=ACTAAGCTCCTCTTCTCSYCGTC
+++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+++++++++++++++++++GACGRSGAGAAGAGGAGCTTAGTT start pos=307 approx Tm=60.87
approx %gc=50.00 length=24 rev comp=AACTAAGCTCCTCTTCTCSYCGTC
+++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+CTCCAYGCAGTGAYGCTG start pos=352 approx Tm=60.14 approx %gc=61.11
length=18 rev comp=CAGCRTCACTGCRTGGAG
+++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+DGGGCAGAACTGTGGCTCT start pos=440 approx Tm=60.00 approx %gc=57.89
length=19 rev comp=AGAGCCACAGTTCTGCCCH
------------------------------------------------------------------------------
------------------------------------------------------------------------------
------------------------------------------------------------------------------
------------------------------------------------------------------------------
------------------------------------------------------------------------------
---------------------------------------------------------ACTGTGGCTCTGGGCATC
start pos=448 approx Tm=59.78 approx %gc=61.11 length=18 rev
comp=GATGCCCAGAGCCACAGT
+++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+CCAACCTTRCATCTGGAGR start pos=517 approx Tm=59.77 approx %gc=52.63
length=19 rev comp=YCTCCAGATGYAAGGTTGG
+++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+CRRACAGCGACATGGTGC start pos=584 approx Tm=59.98 approx %gc=61.11
length=18 rev comp=GCACCATGTCGCTGTYYG
+++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+CGACATGGTGCGRTTTCTC start pos=591 approx Tm=60.22 approx %gc=52.63
length=19 rev comp=GAGAAAYCGCACCATGTCG
+++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+GACATGGTGCGRTTTCTCTT start pos=592 approx Tm=60.12 approx %gc=50.00
length=20 rev comp=AAGAGAAAYCGCACCATGTC
+++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+ACATGGTGCGRTTTCTCTTCTAC start pos=593 approx Tm=59.67 approx %gc=43.48
length=23 rev comp=GTAGAAGAGAAAYCGCACCATGT
+++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+TGGTGCGRTTTCTCTTCTACAR start pos=596 approx Tm=59.88 approx %gc=40.91
length=22 rev comp=YTGTAGAAGAGAAAYCGCACCA
+++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+++++++++++++++++++++++++++++++++++++RTCASCACCCTCATGTCTGTC start pos=637
approx Tm=59.83 approx %gc=52.38 length=21 rev comp=GACAGACATGAGGGTGSTGAY
+++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++ASCACCCTCATGTCTGTCG start pos=640
approx Tm=59.84 approx %gc=57.89 length=19 rev comp=CGACAGACATGAGGGTGST
+++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+CTGGTWCATCWGCACAGCAGA start pos=669 approx Tm=60.06 approx %gc=52.38
length=21 rev comp=TCTGCTGTGCWGATGWACCAG
---End of Primer List---
Degenerate Primer
Primer pair 1
Self Self 3'
Sequence (5'->3') Length Tm GC%
complementarity complementarity
Forward
TTGAGATTTCCCATCATCCCC 21 57.40 47.62 4.00 0.00
primer
Reverse TCTGCTGTGCTGATGTACCAG 21 60.07 52.38 4.00 4.00
primer
Products on target templates
Primer pair 1
Self Self 3'
Sequence (5'->3') Length Tm GC%
complementarity complementarity
Forward
GACGACGAGAAGAGGAGCTTAGTT 24 61.92 50.00 4.00 3.00
primer
Reverse
GAGAAACCGCACCATGTCG 19 59.21 57.89 4.00 2.00
primer
Products on target templates
Kesimpulan